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🎨 circadia

Shared colour palettes, ggplot2 theme, and scales for the Circadia Lab R ecosystem.

License: MIT R R-CMD-check

📖 What is circadia?

circadia is the visual identity layer for the Circadia Lab R ecosystem. It provides a consistent set of brand colours, a clean ggplot2 theme, and discrete and continuous scale functions that plug directly into plots produced by zeitR, slumbR, tallieR, syncR, and standalone analysis notebooks.

✨ Features

  • 🎨 Five named palettes — main (6-colour qualitative), core (4-colour compact), diverging (blue → antique white → coral), blues (sequential), warm (sequential)
  • 🔬 Domain colour map — domain_colour_for() returns the brand colour for a named data domain ("actigraphy", "sleep", "circadian", "questionnaire", "demographics", "clinical")
  • 📊 Discrete scales — scale_colour_circadia() and scale_fill_circadia() for categorical data
  • 🌈 Continuous scales — scale_colour_circadia_c() and scale_fill_circadia_c() with colour interpolation
  • 🖼 theme_circadia() — minimal ggplot2 theme with configurable gridlines, Circadia Lab typography, and brand accent colours

🗂️ Project Structure 

circadia/
├── R/
│   ├── circadia-package.R   # package-level documentation
│   ├── palettes.R           # palette definitions and retrieval functions
│   ├── scales.R             # ggplot2 discrete and continuous scales
│   └── theme.R              # theme_circadia()
├── tests/
│   └── testthat/
│       ├── test-palettes.R
│       └── test-scales.R
├── vignettes/
│   └── getting-started.Rmd
├── _pkgdown.yml
├── DESCRIPTION
└── LICENSE

🚀 Getting Started

Installation 

# install.packages("remotes")
remotes::install_github("circadia-bio/circadia")

Basic usage 

library(circadia)
library(ggplot2)

# Retrieve a palette
circadia_palette("core")
#> deep_blue    coral_red        amber antique_white
#> "#014370"   "#FC544A"   "#FFA75D"   "#FFECD4"

# Domain colour lookup
domain_colour_for("sleep")
#>     sleep
#> "#1B6799"

# Apply theme and scales to a plot
ggplot(mtcars, aes(wt, mpg, colour = factor(cyl))) +
  geom_point(size = 3) +
  scale_colour_circadia() +
  theme_circadia()

# Continuous fill scale with the diverging palette
ggplot(faithfuld, aes(waiting, eruptions, fill = density)) +
  geom_tile() +
  scale_fill_circadia_c("warm") +
  theme_circadia(grid = "none")

📦 Dependencies

Package Version Purpose
ggplot2 ≥ 3.4.0 Theme and scale infrastructure

👥 Authors

Role Name Affiliation
Author, maintainer Lucas França Northumbria University
Author Mario Leocadio-Miguel Northumbria University
  • ⌚️ zeitR — wrist actigraphy analysis and circadian metrics
  • 🛌 slumbR — sleep diary processing
  • 🧮 tallieR — sociodemographic and questionnaire data
  • 🔄 syncR — unified participant-indexed database
  • 🔬 circadia-bio — the Circadia Lab GitHub organisation

📄 Licence

Released under the MIT License.

Copyright © Lucas França, Mario Leocadio-Miguel, 2025